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1

PSF correction in soft x-ray tomography

Ekman, Axel, Weinhardt, Venera, Chen, Jian-Hua, McDermott, Gerry, Le Gros, Mark A., Larabell, Carolyn

Journal:

Journal of Structural Biology

Year:

2018

Language:

english

File:

PDF, 1.91 MB

english, 2018

2

Quantum dot-based cell motility assay

Teresa Pellegrino, Wolfgang J. Parak, Rosanne Boudreau, Mark A. Le gros, Daniele Gerion, A. Paul Alivisatos, Carolyn A. Larabell

Journal:

Differentiation

Year:

2003

Language:

english

File:

PDF, 2.94 MB

english, 2003

3

Soft X-Ray Tomography Reveals Gradual Chromatin Compaction and Reorganization during Neurogenesis In Vivo

Le Gros, Mark A., Clowney, E. Josephine, Magklara, Angeliki, Yen, Angela, Markenscoff-Papadimitriou, Eirene, Colquitt, Bradley, Myllys, Markko, Kellis, Manolis, Lomvardas, Stavros, Larabell, Carolyn A

Journal:

Year:

2016

Language:

english

File:

PDF, 5.14 MB

english, 2016

4

Imaging cell morphology and physiology using X-rays

Weinhardt, Venera, Chen, Jian-Hua, Ekman, Axel, McDermott, Gerry, Le Gros, Mark A., Larabell, Carolyn

Journal:

Biochemical Society Transactions

Year:

2019

File:

PDF, 3.50 MB

2019

5

Correlative cryogenic tomography of cells using light and soft x-rays

Smith, Elizabeth A., Cinquin, Bertrand P., Do, Myan, McDermott, Gerry, Le Gros, Mark A., Larabell, Carolyn A.

Journal:

Ultramicroscopy

Year:

2014

Language:

english

File:

PDF, 1.84 MB

english, 2014

6

Imaging and characterizing cells using tomography

Do, Myan, Isaacson, Samuel A., McDermott, Gerry, Le Gros, Mark A., Larabell, Carolyn A.

Journal:

Archives of Biochemistry and Biophysics

Year:

2015

Language:

english

File:

PDF, 2.26 MB

english, 2015

7

Biological applications of colloidal nanocrystals

Parak, Wolfgang J, Gerion, Daniele, Pellegrino, Teresa, Zanchet, Daniela, Micheel, Christine, Williams, Shara C, Boudreau, Rosanne, Gros, Mark A Le, Larabell, Carolyn A, Alivisatos, A Paul

Journal:

Year:

2003

Language:

english

File:

PDF, 687 KB

english, 2003

8

The Topological Organization of the Inactive X Chromosome in its Native State

Smith, Elizabeth A., McDermott, Gerry, Leung, Karen, Panning, Barbara, Larabell, Carolyn A., Le Gros, Mark A.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 113 KB

english, 2014

9

Imaging cell morphology and physiology using X-rays

Weinhardt, Venera, Chen, Jian-Hua, Ekman, Axel, McDermott, Gerry, Le Gros, Mark A., Larabell, Carolyn

Journal:

Biochemical Society Transactions

Year:

2019

Language:

english

File:

PDF, 3.50 MB

english, 2019

10

Putting Molecules in Their Place

Cinquin, Bertrand P., Do, Myan, McDermott, Gerry, Walters, Alison D., Myllys, Markko, Smith, Elizabeth A., Cohen-Fix, Orna, Le Gros, Mark A., Larabell, Carolyn A.

Journal:

Journal of Cellular Biochemistry

Year:

2014

Language:

english

File:

PDF, 1.09 MB

english, 2014

11

Cryo X-ray Tomography: New Tool for 3-D Imaging of Biological Specimens at better than 50 nm Resolution

Le Gros, Mark A, Larabell, Carolyn A

Journal:

Microscopy and Microanalysis

Year:

2004

Language:

english

File:

PDF, 102 KB

english, 2004

12

Localizing Molecules in Cellular CT Scans

Larabell, Carolyn, McDermott, Gerry, Le Gros, Mark

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 37 KB

english, 2016

13

Switchable resolution in soft x-ray tomography of single cells

Weinhardt, Venera, Chen, Jian-Hua, Ekman, Axel A., Guo, Jessica, Remesh, Soumya G., Hammel, Michal, McDermott, Gerry, Chao, Weilun, Oh, Sharon, Le Gros, Mark A., Larabell, Carolyn A., Grulkowski, Iren

Journal:

Year:

2020

Language:

english

File:

PDF, 2.23 MB

english, 2020

14

Imaging Sub-cellular 3D Structures Using Soft X-ray Microscopy

Chen, Jian-Hua, Ekman, Axel, Weinhardt, Venera, Loconte, Valentina, Dermott, Gerry Mc, Le Gros, Mark A., Larabell, Carolyn

Journal:

Microscopy and Microanalysis

Year:

2020

File:

PDF, 207 KB

2020

15

Correlative microscopy methods that maximize specimen fidelity and data completeness, and improve molecular localization capabilities

Smith, Elizabeth A., Cinquin, Bertrand P., McDermott, Gerry, Le Gros, Mark A., Parkinson, Dilworth Y., Kim, Hong Tae, Larabell, Carolyn A.

Journal:

Journal of Structural Biology

Year:

2013

Language:

english

File:

PDF, 1.32 MB

english, 2013

16

Macrophage-Derived Human Resistin Is Induced in Multiple Helminth Infections and Promotes Inflammatory Monocytes and Increased Parasite Burden

Jang, Jessica C., Chen, Gang, Wang, Spencer H., Barnes, Mark A., Chung, Josiah I., Camberis, Mali, Le Gros, Graham, Cooper, Philip J., Steel, Cathy, Nutman, Thomas B., Lazar, Mitchell A., Nair, Meera

Journal:

Year:

2015

Language:

english

File:

PDF, 1.24 MB

english, 2015

17

Visualizing and quantifying cell phenotype using soft X-ray tomography

Gerry McDermott, Douglas M. Fox, Lindsay Epperly, Modi Wetzler, Annelise E. Barron, Mark A. Le Gros, Carolyn A. Larabell

Journal:

Year:

2012

Language:

english

File:

PDF, 384 KB

english, 2012

18

Automatic alignment and reconstruction of images for soft X-ray tomography

Dilworth Y. Parkinson, Christian Knoechel, Chao Yang, Carolyn A. Larabell, Mark A. Le Gros

Journal:

Journal of Structural Biology

Year:

2012

Language:

english

File:

PDF, 1.05 MB

english, 2012

19

Soft X-ray microscopy analysis of cell volume and hemoglobin content in erythrocytes infected with asexual and sexual stages of Plasmodium falciparum

Eric Hanssen, Christian Knoechel, Megan Dearnley, Matthew W.A. Dixon, Mark Le Gros, Carolyn Larabell, Leann Tilley

Journal:

Journal of Structural Biology

Year:

2012

Language:

english

File:

PDF, 943 KB

english, 2012

20

TiO2 nanoparticles as a soft X-ray molecular probe

Ashcroft, Jared M., Gu, Weiwei, Zhang, Tierui, Hughes, Steven M., Hartman, Keith B., Hofmann, Cristina, Kanaras, Antonios G., Kilcoyne, David A., Le Gros, Mark, Yin, Yadong, Alivisatos, A. Paul, Larab

Journal:

Chemical Communications

Year:

2008

Language:

english

File:

PDF, 727 KB

english, 2008

21

Soft X‐ray Microcopy at the ALS

Denbeaux, Gregory, Fischer, Peter, Schneider, Gerd, Liddle, J. Alexander, Anderson, Erik, Pearson, Angelic, Chao, Weilun, Larabell, Carolyn, Le Gros, Mark, Attwood, David, Warwick, Tony, Ade, Harald,

Journal:

Synchrotron Radiation News

Year:

2003

Language:

english

File:

PDF, 1.41 MB

english, 2003

22

Annotated mitochondrial genome with Nanopore R9 signal for Nippostrongylus brasiliensis

Chandler, Jodie, Camberis, Mali, Bouchery, Tiffany, Blaxter, Mark, Le Gros, Graham, Eccles, David A

Journal:

Year:

2017

Language:

english

File:

PDF, 2.88 MB

english, 2017

23

Quantifying Changes in Nuclear Organization in Normal vs. Cancer Cells using X-ray Tomography

Smith, Elizabeth A., Le Gros, Mark A., Myllys, Markko, Larabell, Carolyn A.

Journal:

Microscopy and Microanalysis

Year:

2014

Language:

english

File:

PDF, 687 KB

english, 2014

24

Correlated Soft X-Ray Tomography and Cryogenic Confocal Fluorescence Microscopy

Smith, Elizabeth A., Le Gros, Mark A., Larabell, Carolyn A.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 37 KB

english, 2012

25

Quantitative 3-D imaging of eukaryotic cells using soft X-ray tomography

Dilworth Y. Parkinson, Gerry McDermott, Laurence D. Etkin, Mark A. Le Gros, Carolyn A. Larabell

Journal:

Journal of Structural Biology

Year:

2008

Language:

english

File:

PDF, 2.84 MB

english, 2008

26

Mesoscale imaging with cryo-light and x-rays: Larger than molecular machines, smaller than a cell

Ekman, Axel A., Chen, Jian-Hua, Guo, Jessica, McDermott, Gerry, Gros, Mark A. Le, Larabell, Carolyn A.

Journal:

Biology of the Cell

Year:

2016

Language:

english

File:

PDF, 1.09 MB

english, 2016

27

PSF Corrected Reconstruction in Soft X-ray Tomography (SXT)

Ekman, Axel, Plautz, Tia E., Chen, Jian-Hua, McDermott, Gerry, Le Gros, Mark A., Larabell, Carolyn

Journal:

Microscopy and Microanalysis

Year:

2017

Language:

english

File:

PDF, 442 KB

english, 2017

28

Task Based Semantic Segmentation of Soft X-ray CT Images Using 3D Convolutional Neural Networks

Ekman, Axel, Chen, Jian-Hua, Dermott, Gerry Mc, Le Gros, Mark A., Larabell, Carolyn

Journal:

Microscopy and Microanalysis

Year:

2020

File:

PDF, 370 KB

2020

29

Quantitative analysis of yeast internal architecture using soft X-ray tomography

Maho Uchida, Yidi Sun, Gerry McDermott, Christian Knoechel, Mark A. Le Gros, Dilworth Parkinson, David G. Drubin, Carolyn A. Larabell

Journal:

Year:

2011

Language:

english

File:

PDF, 386 KB

english, 2011

30

X-ray tomography of Schizosaccharomyces pombe

Weiwei Gu, Laurence D. Etkin, Mark A. Le Gros, Carolyn A. Larabell

Journal:

Differentiation

Year:

2007

Language:

english

File:

PDF, 1.71 MB

english, 2007

31

Semiconductor Quantum Rods as Single Molecule Fluorescent Biological Labels

Fu, Aihua, Gu, Weiwei, Boussert, Benjamin, Koski, Kristie, Gerion, Daniele, Manna, Liberato, Le Gros, Mark, Larabell, Carolyn A., Alivisatos, A. Paul

Journal:

Year:

2007

Language:

english

File:

PDF, 2.64 MB

english, 2007

32

Population-based 3D genome structure analysis reveals driving forces in spatial genome organization

Tjong, Harianto, Li, Wenyuan, Kalhor, Reza, Dai, Chao, Hao, Shengli, Gong, Ke, Zhou, Yonggang, Li, Haochen, Zhou, Xianghong Jasmine, Le Gros, Mark A., Larabell, Carolyn A., Chen, Lin, Alber, Frank

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.77 MB

english, 2016

33

Correlated Soft X-ray and Cryogenic Fluorescence Tomography Is a Powerful Tool to Explore the Role of Mitochondria-Associated Membranes in Insulin Secretory Pathway

Loconte, Valentina, Chen, Jian-Hua, Ekman, Axel, Le Gros, Mark A., Dermott, Gerry Mc, White, Kate, Larabell, Carolyn

Journal:

Microscopy and Microanalysis

Year:

2020

File:

PDF, 217 KB

2020

34

Quantitative 3D analysis of structural organization of normal and tumor cells

Larabell, Carolyn A., Le Gros, Mark A.

Journal:

Microscopy and Microanalysis

Year:

2017

File:

PDF, 704 KB

2017

35

Advances in Soft X-ray Tomography

Weinhardt, Venera, Chen, Jian-Hua, Ekman, Axel, Le Gros, Mark A., Dermott, Gerry Mc, Larabell, Carolyn

Journal:

Microscopy and Microanalysis

Year:

2020

File:

PDF, 255 KB

2020

36

Multimodal Imaging and Soft X-ray Nanotomography to Optimize Algal-based Lipid Feedstocks

Smallwood, Chuck, Chrisler, William, Chen, Jian-Hua, Patello, Emma, Boudreau, Rosanne, Le Gros, Mark, McDermott, Gerry, Evans, James E.

Journal:

Microscopy and Microanalysis

Year:

2017

Language:

english

File:

PDF, 239 KB

english, 2017

37

Analysis of the TCR Vβ Specificities of Bacterial Superantigens Using PCR

Malak Kotb, Rika Watanabe-Ohnishi, Bo Wang, Mark A. Tomai, Leighton Le Gros, Patrick M. Schlievert, Maha El Demellawy, Arthur M. Geller

Journal:

Year:

1993

File:

PDF, 766 KB

1993

38

2314.1 Board # B690.1 – Biological Applications of Colloidal Nanocrystals

Parak, Wolfgang J., Pellegrino, Teresa, Boudreau, Rosanne, Gros, Mark Le, Gerion, Daniele, Micheel, Christine M., Larabell, Carolyn A., Alivisatos, Paul

Journal:

Biophysical Journal

Year:

2003

Language:

english

File:

PDF, 21 KB

english, 2003

39

Quantitatively Imaging Chromosomes by Correlated Cryo-Fluorescence and Soft X-Ray Tomographies

Smith, Elizabeth A., McDermott, Gerry, Do, Myan, Leung, Karen, Panning, Barbara, Le Gros, Mark A., Larabell, Carolyn A.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 1.71 MB

english, 2014

40

X-ray tomography of whole cells

Mark A Le Gros, Gerry McDermott, Carolyn A Larabell

Journal:

Current Opinion in Structural Biology

Year:

2005

Language:

english

File:

PDF, 741 KB

english, 2005

41

Soft X-ray tomography and cryogenic light microscopy: the cool combination in cellular imaging

Gerry McDermott, Mark A. Le Gros, Christian G. Knoechel, Maho Uchida, Carolyn A. Larabell

Journal:

Trends in Cell Biology

Year:

2009

Language:

english

File:

PDF, 3.35 MB

english, 2009

42

Visualizing Cell Architecture and Molecular Location Using Soft X-Ray Tomography and Correlated Cryo-Light Microscopy

McDermott, Gerry, Le Gros, Mark A., Larabell, Carolyn A.

Journal:

Annual Review of Physical Chemistry

Year:

2012

Language:

english

File:

PDF, 1.20 MB

english, 2012

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